PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126915.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 530aa    MW: 59234.9 Da    PI: 8.7744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12355400555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A +++ sLq
  XP_009126915.1 355 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIARDHLTSLQ 400
                     8899********************97.....8*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15350415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.243350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.67E-12352400No hitNo description
Gene3DG3DSA:4.10.280.102.8E-14354418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10355400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-13356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDAIFLTDDP NTRKQLIGSL AHSFGCIYVS LWSYYFPRPS NYLISFDGYY NEASNEPSTS  60
TGSLARRLFH EYRQSVIPLQ NGHIPSMAFM NNLPYLEIQT QDIQRLASND AQRLFYQEAR  120
IQTVIFMGCR SGEIELGLTY DAANMKVEAS LRDWFPEDFS RKTSPVNSDY LRPQPPPSSS  180
SSSLRSLDSP QNASEYSSLL FPLIPKPSTT TDAVNVPLHT LLAPVTTAET TTNMIHQQQQ  240
EPLFRNRERE EEVMTQAILA VLSMSSSPSS PQRKGKATAF KRYYCVASGG GGSGRAPQPP  300
SVRRQSMMKR AISFYNRLNI NWRERFPATG GGSDGIGGSG GGGGGRGPTA TQLHHMISER  360
KRREKLNESF QALRSLLPPG TKKDKASVLT IARDHLTSLQ GDISKLLERN RELEAKLAGE  420
REMEIFLQAD ERFNVRIIHI PESTSRERVL DLRIAHRGDN IGADDLIIRL LEFLKHINNV  480
SLVSIDGKTR AREDGVTSVI LVSLRLKIEG ECDESAFQEA IRRVVADLAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363ERKRRE
2359364RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240353e-35AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026883e-35CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126915.10.0PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A078G7U10.0A0A078G7U1_BRANA; BnaA02g08430D protein
STRINGBra035639.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein